+--------------------------------------------------------------------+
| |
| NONMEM STEPS |
| |
+--------------------------------------------------------------------+
MEANING: Sequence of events in a NONMEM problem
CONTEXT: NONMEM output
DISCUSSION:
NONMEM loads information from a model specification file, if $MSFI is
present NONMEM makes a single call to PRED (with ICALL=0), at the
beginning of the run, to allow PRED to undertake run initialization
(INITL).
NONMEM makes a single call to PRED (with ICALL=1), at the beginning of
every problem, to allow PRED to undertake problem initialization
(INITL).
SIMULATION STEP
NONMEM inputs initial fixed effects parameters from file speci-
fied by $CHAIN, if record is present NONMEM performs simulation
(with ICALL=4) (if $SIMULATION present).
INITIAL ESTIMATE STEP (with ICALL=2)
NONMEM obtains initial estimates for theta, omega, sigma (if the
control stream does not provide all initial estimates).
ESTIMATION STEP (with ICALL=2)
NONMEM inputs initial etas from file specified by $ETAS/$PHIS, if
record is present NONMEM searches for parameter values that mini-
mize the objective function (if $ESTIMATION present). With NON- |
MEM 7, multiple Estimation Steps can be implemented in a single |
problem. A sequence of two or more Estimation Steps will |
result in the sequential execution of each.
COVARIANCE STEP (with ICALL=2)
NONMEM obtains a variance-covariance matrix of the estimator and
related information such as standard errors (if $COVARIANCE
present).
FINALIZATION STEP (with ICALL=2,5,6)
NONMEM obtains the following as needed:
Classification into subpopulations (if a MIXTURE model is |
used)(FNLMOD).
Posthoc estimates of eta (FNLETA). |
Nonparametric step (NONPAR, with ICALL=2): NONMEM obtains
either marginal cumulatives or conditional (nonparametric)
estimates of etas (if $NONPARAMETRIC present).
PRED-defined values from NMPRD4 (NP4F) (for tables and scat-
terplots).
NONMEM computes WRES and other diagnostics if they are to be displayed |
in tables or scatters. (PRRES)
NONMEM makes a single call to PRED (with ICALL=3), at the end of every
problem (and subproblem), to allow PRED to undertake problem finaliza-
tion.
TABLE STEP
NONMEM constructs tables (if $TABLE present).
SCATTERPLOT STEP
NONMEM constructs scatterplots (if $SCATTERPLOT present).
REFERENCES: Guide I Section A.4, G
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