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MEANING: Insert User-Defined Labels in Additional Files (NM75)
CONTEXT: NONMEM run
The label substitution process is described in
I.28.General New Options for $ESTIMATION Record (NOSUB=0)
I.6.Expansions on Abbreviated and Verbatim Code and Other Items
It is normally done only in the NONMEM report file, but not in the
additional files, such as the .ext, .cov, .coi, .phi, etc. These addi-
tional files need often be read by 3rd party software, which may rely
on traditional names for thetas, omegas, sigmas, phi, eta, etc. None-
theless, one may wish to make label substitutions on these additional
files, which can be done after the NONMEM analysis, using the
label_replace utility.
USAGE:
lblr file1 file2 file3 [S|T|C] [0|1|2]
file1
Input file to have label substitutions done. Typically this is
the name of the NONMEM report file (e.g., root.res).
file2
NONMEM report file containing label substitution patterns, or any
file containing label substitution patterns such as:
THETA(1)=THETA(CL)
ETA(2)=ETA(ETV1)
EPS(1)=EPS(RSW)
file3
The results are written to file3.
Option 1
Option 1 may be summarized as [S|T|C]
S=Expand and adjust with spaces (default)
T=Do not expand, and truncate label if necessary
C=Expand, and compress so there are no spaces (suitable only for comma delimited files)
Option 2
Option 2 may be summarized as [0|1|2]
0=Full name of parameter type (THETA/OMEGA/SIGMA/ETA/EPS/PHI/ETC/PHC) (default)
1=two letter truncation of parameter type name (TH/OM/SG/ET/EP/PH/EC/PC)
2=single letter truncation of parameter type name (T/O/S/E/P/H/C/C)
Truncated parameter type name (1 or 2) works well with T, when no
label expansion is permitted, and you want to make the label as com-
pact as possible.
If the user specified NOSUB=1, then the thetas, omegas/etas, and sig-
mas/eps will not have been label substituted during the NONMEM execu-
tion. The user may wish to make the label substitution afterword with
label_replace. For example,
lblr myresult.res myresult.res myresult_new.res T 2
Notice in this example that the report file myresult.res serves as the
input file, and the file from which to get label substitution pattern.
If you also want to perform an lpcc, do lblr first, then the lpcc
utility.
See INTRODUCTION TO NONMEM 7, lblr: Insert User-Defined Labels in
Additional Files
REFERENCES: Guide Introduction_7
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