+--------------------------------------------------------------------+
| |
| BAYES EXAMPLE 5 |
| |
+--------------------------------------------------------------------+
This is example5.ctl from the NONMEM 7 distribution medium. It, along
with the data file, can be found in the examples directory.
;Model Desc: Population Mixture Problem in 1 Compartment model,
; with rate constant parameter mean modeled for two
; sub-populations, but its inter-subject variance is the same in
; both sub-populations Project Name: nm7examples
;Project ID: NO PROJECT DESCRIPTION
$PROB RUN# example5 (from ad1tr1m4t)
$INPUT C SET ID JID TIME CONC=DV DOSE=AMT RATE EVID MDV CMT VC1
K101 VC2 K102 SIGZ PROB
$DATA example5.csv IGNORE=C
$SUBROUTINES ADVAN1 TRANS1
$MIX
P(1)=THETA(4)
P(2)=1.0-THETA(4)
NSPOP=2
$PK
Q=1
IF(MIXNUM.EQ.2) Q=0
MU_1=THETA(1)
; Note that MU_2 can be modeled as THETA(2) or THETA(3),
; depending on the MIXNUM value.
; Also, we are avoiding IF/THEN blocks.
MU_2=Q*THETA(2)+(1.0-Q)*THETA(3)
V=DEXP(MU_1+ETA(1))
K=DEXP(MU_2+ETA(2))
S1=V
$ERROR
Y = F + F*EPS(1)
$THETA
(-1000.0 4.3 1000.0) ;[MU_1]
(-1000.0 -2.9 1000.0) ;[MU_2-1]
(-1000.0 -0.67 1000.0) ;[MU_2-2]
(0.0001 0.667 0.9999) ;[P(1)]
$OMEGA BLOCK(2)
0.04 ;[p]
0.01 ;[f]
0.04 ;[p]
$SIGMA
0.01 ;[p]
$EST METHOD=ITS INTERACTION NITER=100 PRINT=1 NOABORT SIGL=8
FILE=example5.ext CTYPE=3
$EST METHOD=IMPMAP INTERACTION NITER=20 ISAMPLE=300 PRINT=1
NOABORT SIGL=8
$EST METHOD=IMP INTERACTION NITER=20 ISAMPLE=1000 PRINT=1
NOABORT SIGL=6
$EST NBURN=500 NITER=500 METHOD=SAEM INTERACTION PRINT=10
SIGL=6 ISAMPLE=2
$EST METHOD=IMP INTERACTION NITER=5 ISAMPLE=1000 PRINT=1
NOABORT SIGL=6 EONLY=1 MAPITER=0
$EST METHOD=BAYES INTERACTION NBURN=2000 NITER=5000 PRINT=10
FILE=example5.txt SIGL=8
$EST MAXEVAL=9999 NSIG=2 SIGL=8 PRINT=10 FILE=example5.ext
METHOD=CONDITIONAL INTERACTION NOABORT
$COV MATRIX=R
REFERENCES: Guide Introduction_7
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